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aldex2
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Model matrix for a complex study design using aldex.glm module from ALDEx2 R package
ALDEx2
modelmatrix
covariates
2.3 years ago
amir
• 0
0
votes
3
replies
3.3k
views
How to correctly interpret ALDEx2 output - differential abundance testing
MicrobiomeData
ALDEx2
updated 2.6 years ago by
Lucie
• 0 • written 2.9 years ago by
RvH
• 0
0
votes
0
replies
1.0k
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ALDEx2 Error Message: "dim(X) must have a positive length" when using aldex.clr() with denom="iqlr"
Metagenomics
IQLR
ALDEx2
2.9 years ago
cwarden45
• 0
1
vote
4
replies
2.0k
views
How to create an aldex.clr object from a "selex" data table
ALDEx2
3.4 years ago
Greg
• 0
0
votes
0
replies
953
views
Aldex2 BioCParallel issues
aldex2
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
jc235601
▴ 20
2
votes
0
replies
1.2k
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Aldex2 error following tutorial - complex study design
software error
aldex2
6.4 years ago
mstagliamonte
▴ 10
0
votes
0
replies
1.3k
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Aldex2 feature request - controlling for additional variables
ALDEx2
ALDEx
microbiome
16s
6.9 years ago
mstagliamonte
▴ 10
7 results • Page
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Answer: Integration: Paired-end vs healthy single-end from a different source
by
wba64023
• 0
Interesting comparison! The source differences can definitely impact read quality and bias. Curious to see how you handle normalization bet…
Comment: Could we detect difference at pathway level but not significant different at gen
by
wba64023
• 0
thanks for sharing! [slope 2][1] [1]: https://slope2.online
Comment: After running samtools, the featureCounts command crashed.
by
eja.gssssse.r.m
• 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type
by
eja.gssssse.r.m
• 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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