Bioconductor Aldex2

Showing : aldex2 • reset

votes

replies

1.2k

views

ALDEx2 modelmatrix covariates

2.6 years ago amir • 0

votes

replies

3.5k

views

MicrobiomeData ALDEx2

updated 2.8 years ago by Lucie • 0 • written 3.1 years ago by RvH • 0

votes

replies

1.1k

views

Metagenomics IQLR ALDEx2

3.1 years ago cwarden45 • 0

vote

replies

2.1k

views

ALDEx2

3.6 years ago Greg • 0

votes

replies

992

views

aldex2

updated 6.6 years ago by Martin Morgan 25k • written 6.6 years ago by jc235601 ▴ 20

votes

replies

1.3k

views

software error aldex2

6.6 years ago mstagliamonte ▴ 10

votes

replies

1.3k

views

ALDEx2 ALDEx microbiome 16s

7.1 years ago mstagliamonte ▴ 10

7 results • Page 1 of 1

Recent ...

Replies

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

Awards • All