Showing : aldex2 • reset
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Model matrix for a complex study design using aldex.glm module from ALDEx2 R package
ALDEx2 modelmatrix covariates
2.6 years ago amir • 0
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3
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3.6k
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How to correctly interpret ALDEx2 output - differential abundance testing
MicrobiomeData ALDEx2
updated 2.8 years ago by • 0 • written 3.1 years ago by • 0
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1.1k
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ALDEx2 Error Message: "dim(X) must have a positive length" when using aldex.clr() with denom="iqlr"
Metagenomics IQLR ALDEx2
3.1 years ago cwarden45 • 0
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4
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2.1k
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How to create an aldex.clr object from a "selex" data table
ALDEx2
3.6 years ago Greg • 0
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993
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Aldex2 BioCParallel issues
aldex2
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 20
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1.3k
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Aldex2 error following tutorial - complex study design
software error aldex2
6.6 years ago mstagliamonte ▴ 10
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1.3k
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Aldex2 feature request - controlling for additional variables
ALDEx2 ALDEx microbiome 16s
7.1 years ago mstagliamonte ▴ 10
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Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0
Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…
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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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