Bioconductor MicrobiomeData

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Metagenomics dada2 MicrobiomeData

10 months ago • updated 8 months ago abhisek001 • 0

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MicrobiomeData ALDEx2

updated 2.1 years ago by Lucie • 0 • written 2.4 years ago by RvH • 0

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MicrobiomeData R microbiomeutilities Install

2.2 years ago abhisek001 • 0

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MicrobiomeData Microbiome

2.4 years ago Levi Waldron ★ 1.1k

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MicrobiomeData curatedMetagenomicData

2.5 years ago • updated 2.4 years ago Pauline ▴ 20

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795

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Network Transcriptomics MicrobiomeData RNASEQ WCGNA

2.7 years ago Julieta • 0

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MicrobiomeData microbiome offtopic

updated 3.8 years ago by James W. MacDonald 68k • written 3.8 years ago by gwagz8 • 0

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sparcc Microbiome microbiomeExplorer MicrobiomeData

updated 3.9 years ago by Kevin Blighe ★ 4.0k • written 3.9 years ago by GlycineMax • 0

8 results • Page 1 of 1

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Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

Votes

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

Awards • All

Scholar to James W. MacDonald 68k