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Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
by
Michael Love
43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2.
> several ASVs belong to the same genus but are not iden…
Comment: Highly DE genes but small count difference within conditions
by
shy.hippopotamus.yxmb
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Comment: Highly DE genes but small count difference within conditions
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shy.hippopotamus.yxmb
•
0
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Comment: Highly DE genes but small count difference within conditions
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shy.hippopotamus.yxmb
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0
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Comment: copy number/LOH for Affy 100K
by
igkryycpinmshzugby
•
0
Hi John
For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor.
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