Bioconductor Bambu

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txdb bambu

updated 23 months ago by andre_sim ▴ 20 • written 23 months ago by camilia.savitri • 0

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bambu

updated 2.5 years ago by Jonathan Göke ▴ 60 • written 2.5 years ago by Sheetal • 0

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BAMBU bambu

updated 2.5 years ago by Sheetal • 0 • written 2.7 years ago by Seongwoo Han ▴ 10

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BAMBU bambu

updated 2.6 years ago by Andre ▴ 20 • written 2.7 years ago by Seongwoo Han ▴ 10

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BAMBU bambu

2.7 years ago Seongwoo Han ▴ 10

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Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k

The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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