Showing : bayespeak • reset
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak bug
7.7 years ago balwierz ▴ 40
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Error in bayespeak function importing data
bayespeak
8.7 years ago Reed ▴ 10
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9
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 8.9 years ago by 50k • written 9.0 years ago by ▴ 140
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chip-seq data
ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak
11.6 years ago John linux-user ▴ 210
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Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
11.8 years ago • updated 11.7 years ago Julie Zhu ★ 4.3k
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Upgrade bioconductor to version 2.6
BayesPeak BayesPeak
12.7 years ago Mary Ellen Fitzpatrick ▴ 20
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error in bayespeak function
ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq
updated 12.8 years ago by ▴ 130 • written 12.8 years ago by ▴ 810
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BayesPeak and RangedData obj output
BayesPeak BayesPeak
updated 13.5 years ago by ▴ 130 • written 13.5 years ago by ▴ 30
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4
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BayesPeak segfault woes
BayesPeak BayesPeak
updated 13.9 years ago by ▴ 130 • written 13.9 years ago by ▴ 270
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Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result by Chris • 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Votes
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
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