Bioconductor BayesPeak

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BayesPeak bug

9.4 years ago balwierz ▴ 40

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bayespeak

10.4 years ago Reed ▴ 10

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 10.7 years ago by Gordon Smyth 53k • written 10.7 years ago by samuel collombet ▴ 140

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ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak

13.4 years ago • updated 13.3 years ago John linux-user ▴ 210

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AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno

13.5 years ago Julie Zhu ★ 4.3k

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BayesPeak BayesPeak

14.4 years ago Mary Ellen Fitzpatrick ▴ 20

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ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq

updated 14.5 years ago by Jonathan Cairns ▴ 130 • written 14.5 years ago by Andreia Fonseca ▴ 810

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1.4k

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BayesPeak BayesPeak

updated 15.2 years ago by Jonathan Cairns ▴ 130 • written 15.2 years ago by Binbin Liu ▴ 30

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BayesPeak BayesPeak

updated 15.6 years ago by Jonathan Cairns ▴ 130 • written 15.6 years ago by Tim Rayner ▴ 270

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Comment: limpa analysis advice by Gordon Smyth 53k

Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …

Comment: limpa analysis advice by SamGG ▴ 360

Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…

Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0

Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…

Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0

Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…

Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Votes

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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