Showing : BayesPeak • reset
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak bug
8.4 years ago balwierz ▴ 40
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3
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1.3k
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Error in bayespeak function importing data
bayespeak
9.4 years ago Reed ▴ 10
8
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9
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6.7k
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 9.6 years ago by 52k • written 9.7 years ago by ▴ 140
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8
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2.2k
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chip-seq data
ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak
12.3 years ago John linux-user ▴ 210
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1.2k
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Question about ChIPpeakAnno R package
AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno
12.4 years ago Julie Zhu ★ 4.3k
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1.1k
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Upgrade bioconductor to version 2.6
BayesPeak BayesPeak
13.4 years ago Mary Ellen Fitzpatrick ▴ 20
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2.1k
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error in bayespeak function
ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq
updated 13.5 years ago by ▴ 130 • written 13.5 years ago by ▴ 810
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1
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1.2k
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BayesPeak and RangedData obj output
BayesPeak BayesPeak
updated 14.2 years ago by ▴ 130 • written 14.2 years ago by ▴ 30
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4
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1.9k
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BayesPeak segfault woes
BayesPeak BayesPeak
updated 14.6 years ago by ▴ 130 • written 14.6 years ago by ▴ 270
9 results • Page 1 of 1
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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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