Bioconductor Bayespeak

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767

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BayesPeak bug

7.1 years ago balwierz ▴ 40

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979

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bayespeak

8.1 years ago Reed ▴ 10

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5.5k

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Chipseq DNAseq ATAC bayespeak narrowpeaks

updated 8.3 years ago by Gordon Smyth 48k • written 8.4 years ago by samuel collombet ▴ 140

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ChIPSeq chipseq BayesPeak ChIPSeq chipseq BayesPeak

11.0 years ago John linux-user ▴ 210

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889

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AnnotationData annotate ChIPpeakAnno BayesPeak AnnotationData annotate ChIPpeakAnno

11.1 years ago Julie Zhu ★ 4.3k

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819

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BayesPeak BayesPeak

12.1 years ago Mary Ellen Fitzpatrick ▴ 20

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ChIPSeq GO BSgenome BSgenome chipseq BayesPeak ChIPSeq GO BSgenome BSgenome chipseq

updated 12.2 years ago by Jonathan Cairns ▴ 130 • written 12.2 years ago by Andreia Fonseca ▴ 810

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893

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BayesPeak BayesPeak

updated 12.9 years ago by Jonathan Cairns ▴ 130 • written 12.9 years ago by Binbin Liu ▴ 30

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1.4k

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BayesPeak BayesPeak

updated 13.3 years ago by Jonathan Cairns ▴ 130 • written 13.3 years ago by Tim Rayner ▴ 270

9 results • Page 1 of 1

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Comment: List of Deprecated Packages for Bioc3.18 by Hervé Pagès 16k

Also the source package is not available [in BioC 3.17](https://bioconductor.org/packages/3.17/CancerInSilico) which means that the package…

Answer: DelayedArray::read_sparse_block by Hervé Pagès 16k

Hi Koki, Sorry again for the slow response. `read_sparse_block()` has been around for years. It's a generic function defined in the *…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Sorry for missing that one too. When writting blocks to an HDF5 file, the `write_block()` method for HDF5RealizationSink or TENxRealizatio…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Hi Koki, sorry for not seeing this before. > will SparseArraySeed in DelayedArray be replaced by this new sparse array format? Yes it wil…

Comment: Manual creation of qPCRset does not work by Ed Siefker ▴ 230

Thanks! This works for me.

Votes

Comment: NPARC package y-variable

Comment: List of Deprecated Packages for Bioc3.18

Answer: Manual creation of qPCRset does not work

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

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