Bioconductor Beadexplorer

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BeadExplorer BeadExplorer

updated 17.2 years ago by Sean Davis 21k • written 17.2 years ago by Yuan Jian ▴ 250

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BeadExplorer BeadExplorer

updated 18.2 years ago by Martin Morgan 25k • written 18.2 years ago by Johnstone, Alice ▴ 410

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674

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BeadExplorer BeadExplorer

18.9 years ago Sylvain.Pradervand ▴ 10

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affy widgetTools limma marray convert affyio BeadExplorer affy widgetTools limma marray

19.2 years ago Vitalina Komashko ▴ 10

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GO limma beadarray BeadExplorer GO limma beadarray BeadExplorer

updated 19.3 years ago by Sean Davis 21k • written 19.3 years ago by Anand Patel ▴ 60

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Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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