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csaw differential binding analysis bin size

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by Ryan C. Thompson 7.8k

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copywriter bin size targeted sequencing

updated 7.6 years ago by t.kuilman 170 • written 7.6 years ago by sshung • 0

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Answer: Problems with FLOWAI by SHASHI • 0

Additionally, if you're looking to clean FCS data files, you can utilize an R script. I've prepared a comprehensive YouTube tutorial to aid…

Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k

I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…

Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0

Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …

Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k

You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…

Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k

Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…

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Answer: How do I merge a list of GRanges?

Comment: DiffBind: dba.plotProfile(profiles)

Comment: DiffBind: dba.plotProfile(profiles)

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