updated 7 months ago by
Mike Smith
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written 7 months ago by
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floriandeckert
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Comment: Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI()
by
shepherl
3.1k
I'm not able to reproduce this. Maybe it was a temporary issue with biomaRt?
```
> makeOrgPackageFromNCBI(
+ version = "0.1",
+ …
Comment: CPM after RUVseq
by
Jess
•
0
Ah I think I know where the communication breakdown is occurring. When I think of RUVr, I'm including fitting the preliminary model in edge…
Answer: NMF installation with current R version
by
shepherl
3.1k
Install the Biobase package
```
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::ins…
Answer: Creating DESeq object and choosing a contrast
by
Michael Love
37k
If you've read over the section on interactions and are still confused what these terms mean, I'd recommend consulting with a statistician …
Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa
by
Michael Love
37k
hi,
Good question. So you can aggregate your swish isoform results to gene level (for which genes are there any significant isoforms) and …
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