Showing : biophysics • reset
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Job: Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
4.1 years ago simonsF.careers • 0
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1.5k
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DEG Calling on Transcripts vs Genes
Biophysics limma Biophysics limma
12.3 years ago Yogesh Saletore ▴ 10
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1.6k
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
12.9 years ago Wang Ming ▴ 20
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1.7k
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xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 12.9 years ago by ★ 1.2k • written 12.9 years ago by ▴ 20
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
13.1 years ago Pan Du ▴ 440
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2.3k
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R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics Biophysics
16.6 years ago mauede@alice.it ▴ 870
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R: R: how to use writeFASTA in modality "append"
Biophysics Biophysics
16.6 years ago mauede@alice.it ▴ 870
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2.1k
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 16.6 years ago by ★ 3.4k • written 16.6 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Biostrings biomaRt miRNA Biophysics Biostrings biomaRt
16.6 years ago mauede@alice.it ▴ 870
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1.5k
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
16.6 years ago michael watson IAH-C ★ 3.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 16.6 years ago by 21k • written 16.6 years ago by ▴ 870
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3
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1.4k
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R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics Biophysics
16.6 years ago mauede@alice.it ▴ 870
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1.5k
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SAM warning
Biophysics Alignment Annotation Normalization Cancer hgu133plus2 probe affy vsn MBCB vsn
17.1 years ago elliot harrison ▴ 230
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1.0k
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Filtering before differential expression analysis of microarrays - New paper out
Biophysics Normalization affy vsn Biophysics Normalization affy vsn
17.1 years ago Steve Lianoglou ★ 13k
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911
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Preprocessing affymetrix array data
Biophysics Biophysics
17.3 years ago Abdi Ali ▴ 20
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1.3k
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Bizarre artifacts in MA plots for ChIP-chip data
Microarray Biophysics Microarray Biophysics
updated 17.4 years ago by ★ 2.4k • written 17.4 years ago by ★ 13k
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1.2k
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Help with creating a figure
Biophysics Biophysics
updated 17.7 years ago by ▴ 340 • written 17.7 years ago by ★ 13k
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2.2k
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Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
19.8 years ago Birgit Hauer ▴ 30
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1.6k
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Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
20.0 years ago Birgit Hauer ▴ 30
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1.6k
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Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
20.0 years ago Birgit Hauer ▴ 30
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1
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1.6k
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ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 22.8 years ago by ★ 2.3k • written 22.8 years ago by ▴ 30
21 results • Page 1 of 1
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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0
the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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