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bluster
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Reproducibility issue with scran together with lapply and BiocParallel
scran
BiocParallel
bluster
7 months ago
ATpoint
★ 4.6k
2
votes
2
replies
548
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Bluster and Varieties of Louvain Clulstering
bluster
updated 8 months ago by
ATpoint
★ 4.6k • written 8 months ago by
Dario Strbenac
★ 1.5k
2
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1
reply
537
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Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 8 months ago by
ATpoint
★ 4.6k • written 8 months ago by
Dario Strbenac
★ 1.5k
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clusterSweep Warning k Capped
bluster
10 months ago
Dario Strbenac
★ 1.5k
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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
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Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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