Bioconductor Scuttle

Showing : scuttle • reset

votes

replies

views

scuttle

8 hours ago Adam • 0

votes

534

views

scran bluster scater scuttle

updated 8 months ago by ATpoint ★ 4.6k • written 8 months ago by Dario Strbenac ★ 1.5k

votes

replies

1.6k

views

scuttle scater

updated 15 months ago by ATpoint ★ 4.6k • written 15 months ago by Abbi Edwards • 0

vote

replies

1.9k

views

scuttle scater seurat SpatialExperiment

22 months ago cathalgking ▴ 10

votes

937

views

scuttle scater SpatialExperiment

updated 22 months ago by alan.ocallaghan ▴ 160 • written 23 months ago by cathalgking ▴ 10

votes

replies

1.6k

views

normalizeCounts scran librarySizeFactors scuttle scRNAseq

2.8 years ago behr201 • 0

votes

replies

2.0k

views

scater SingleCellExperiment BiocParallel scuttle scran

3.1 years ago enricoferrero ▴ 660

votes

replies

2.9k

views

scran SingleCellExperiment scuttle scater

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by enricoferrero ▴ 660

votes

replies

7.0k

views

scran scater scuttle

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by enricoferrero ▴ 660

9 results • Page 1 of 1

Recent ...

Replies

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

Hi, what's the output from `dim(spe)`?

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Awards • All

Popular Question to joseph.joonsang • 0

Popular Question to Hans-Ulrich Klein ▴ 330