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scuttle

updated 4 days ago by Aaron Lun ★ 28k • written 6 days ago by Adam ▴ 10

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scran bluster scater scuttle

updated 8 months ago by ATpoint ★ 4.6k • written 8 months ago by Dario Strbenac ★ 1.5k

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scuttle scater

updated 15 months ago by ATpoint ★ 4.6k • written 15 months ago by Abbi Edwards • 0

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scuttle scater seurat SpatialExperiment

22 months ago cathalgking ▴ 10

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scuttle scater SpatialExperiment

updated 22 months ago by alan.ocallaghan ▴ 160 • written 23 months ago by cathalgking ▴ 10

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

2.8 years ago behr201 • 0

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scater SingleCellExperiment BiocParallel scuttle scran

3.1 years ago enricoferrero ▴ 660

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scran SingleCellExperiment scuttle scater

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by enricoferrero ▴ 660

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scran scater scuttle

updated 4.3 years ago by Aaron Lun ★ 28k • written 4.3 years ago by enricoferrero ▴ 660

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Comment: Running multiple KNN queries in parallel by SamGG ▴ 360

Thank you for your detailed answer, I appreciate it and your work.

Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k

That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …

Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k

The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…

Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k

I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…

Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170

Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.

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Answer: Running multiple KNN queries in parallel

Answer: RSubread output significantly different from bash Subread output

Answer: How to annotate a limma Elist raw class object with an annotation file

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