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scuttle scater SpatialExperiment

15 days ago cathalgking • 0

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normalizeCounts scran librarySizeFactors scuttle scRNAseq

11 months ago behr201 • 0

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scater SingleCellExperiment BiocParallel scuttle scran

15 months ago enricoferrero ▴ 650

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scran SingleCellExperiment scuttle scater

updated 2.0 years ago by Aaron Lun ★ 28k • written 2.1 years ago by enricoferrero ▴ 650

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scran scater scuttle

updated 2.5 years ago by Aaron Lun ★ 28k • written 2.5 years ago by enricoferrero ▴ 650

5 results • Page 1 of 1

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Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Sorry, I don't understand your experiment. You are reading the edgeR Section on on what to do without replicates, but your experiment appe…

Answer: MA plot by Nathalie • 0

Thank you very much for your help and comments. There is errors in my file. BaseMean is BaseMeanLog2. I don't know how insert a file.

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Volcano Plot in R

Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.

Answer: MA plot

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