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branchpointer
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Predict branchpoints closer to the 3' splice site
branchpointer
3.8 years ago
Matthias Lienhard
▴ 280
0
votes
1
reply
975
views
Branchpointer issues with chromosome names and getListElement(x, i, ...)
branchpointer
updated 3.1 years ago by
kiran
• 0 • written 3.8 years ago by
alexandre.maucuer
• 0
0
votes
1
reply
1.5k
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branchpointer: trouble to read gtf
gtfToExons
"Error:subscriptcontainsinvalidnames"
gtf
branchpointer
updated 4.2 years ago by
b.signal
• 0 • written 4.2 years ago by
frank.maiwald
• 0
0
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0
replies
1.2k
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branchpointer ERROR: Error in data.table::fread(paste0(workingDirectory, "/mutation_", uniqueId, :
branchpointer
8.0 years ago
noah.pieta
• 0
4 results • Page
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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