Bioconductor Canis familiaris

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genomeinfodb canis familiaris

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by Robert Castelo ★ 3.4k

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RNASeq Genetics Annotation Canis familiaris gage RNASeq Genetics Annotation gage

updated 11.0 years ago by James W. MacDonald 68k • written 11.0 years ago by Jessica Perry Hekman ▴ 140

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genomicfeatures txdb canis familiaris rna-seq

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by jggomeza • 0

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Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0

Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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Scholar to James W. MacDonald 68k