Biostar Canis familiaris

Showing : canis familiaris • reset

2

votes

5

replies

1.2k

views

genomeinfodb canis familiaris

updated 7.4 years ago by Hervé Pagès 16k • written 7.4 years ago by Robert Castelo ★ 3.0k

0

votes

2

replies

915

views

RNASeq Genetics Annotation Canis familiaris gage RNASeq Genetics Annotation gage

updated 8.9 years ago by James W. MacDonald 62k • written 8.9 years ago by Jessica Perry Hekman ▴ 140

0

votes

1

reply

956

views

genomicfeatures txdb canis familiaris rna-seq

updated 6.0 years ago by James W. MacDonald 62k • written 6.0 years ago by jggomeza • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Giulia • 0

Hi Rory, Thank you for your quick reply and advice on the matter. The following are the MAplots for the analysis using the background=TRU…

Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar by ATpoint ★ 2.4k

I asked the same some years back: https://support.bioconductor.org/p/p134551/#p134561

Comment: FlowSOM with unrelated channels by helucro ▴ 70

Could you perhaps comment one why you would want to include non-biological "unrelated" channels such as time and event length for clusterin…

Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Rory Stark ★ 4.6k

It is unusual to see such a big difference between the two analysis methods, although it is more likely when you have only two replicates d…

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by Rory Stark ★ 4.6k

You need to call `dba.normalize()` twice, first to establish the normalization calculations, and the second time to retrieve them: cou…

Votes

Comment: FlowSOM with unrelated channels

Answer: Can I run DESeq2 with SMART-Seq data

Awards • All

Teacher to Michael Love 39k