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cghmcr
•
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0
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742
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Error run cghMCR function in cghMCR package
cghmcr
6.3 years ago
ljia1180
• 0
0
votes
1
reply
1.0k
views
SGOL plot
cghMCR
cghMCR
updated 8.7 years ago by
pascal.gellert
• 0 • written 12.4 years ago by
viritha kaza
▴ 580
0
votes
2
replies
1.1k
views
questions on cghMCR package
DNAcopy
cghMCR
DNAcopy
cghMCR
updated 12.2 years ago by
Martin Morgan
25k • written 12.2 years ago by
nac
▴ 280
0
votes
0
replies
983
views
Fwd: seeking help on cghMCR pleeeease
DNAcopy
cghMCR
DNAcopy
cghMCR
12.2 years ago
nac
▴ 280
0
votes
0
replies
948
views
seeking help on cghMCR pleeeease
DNAcopy
cghMCR
DNAcopy
cghMCR
12.3 years ago
nac
▴ 280
0
votes
0
replies
987
views
Help on cghMCR units of gapAllowed
DNAcopy
cghMCR
DNAcopy
cghMCR
12.3 years ago
nac
▴ 280
0
votes
0
replies
1.2k
views
cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess
DNAcopy
cghMCR
PROcess
DNAcopy
cghMCR
12.5 years ago
viritha kaza
▴ 580
0
votes
1
reply
1.3k
views
cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy
cghMCR
DNAcopy
cghMCR
updated 12.5 years ago by
Jianhua Zhang
▴ 20 • written 12.5 years ago by
viritha kaza
▴ 580
0
votes
0
replies
815
views
problem with readPositionalInfo() for Nimblegen for ArrayCGH
snapCGH
cghMCR
snapCGH
cghMCR
12.7 years ago
Muksitul Haque
▴ 10
0
votes
1
reply
826
views
vector size issue in CGHMCR
cghMCR
cghMCR
updated 13.0 years ago by
Sean Davis
21k • written 13.0 years ago by
nac
▴ 280
0
votes
0
replies
1.2k
views
cghMCR package - Jianhua Zhang
DNAcopy
cghMCR
DNAcopy
cghMCR
14.2 years ago
Luz G Alonso
▴ 20
0
votes
0
replies
793
views
Converting Seglist to segments file
Cancer
convert
DNAcopy
snapCGH
cghMCR
Cancer
convert
DNAcopy
snapCGH
cghMCR
16.7 years ago
Daniel Brewer
★ 1.9k
0
votes
1
reply
794
views
cghMCR bug?
Cancer
DNAcopy
cghMCR
Cancer
DNAcopy
cghMCR
updated 17.2 years ago by
John Zhang
★ 2.9k • written 17.2 years ago by
Ramon Diaz
★ 1.1k
13 results • Page
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Comment: DEG Filtering
by
Gordon Smyth
50k
RMA normalization is good but batch correction using NOISeq isn't right. Data shouldn't be batch corrected before the limma analysis and NO…
Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
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Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
C: How to check that the reads in two fastq files are in the same order
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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