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Pathview unable to download pathways
clusterProfiler KEGGgraph clusterpr KEGG pathview
updated 2.1 years ago by ★ 4.1k • written 2.2 years ago by ▴ 10
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Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used by s.malik • 0
thanks, will give it a try
Answer: Harmonizing RNA-seq data of different sourceS(cell vs. tissue) to further conduc by James W. MacDonald 67k
Your question is off-topic for this site. You might try over on biostars.org instead.
Answer: Student by deeenes ▴ 60
An alternative is to use [`OmnipathR::translate_ids`][1] (developed by me): ``` library(OmnipathR) library(magrittr) metabolites <- data.…
Comment: Inconsistent result in edgeR by hiroko.ohmiya • 0
Thank you so much! I understand the result after calculating CPMs.
Answer: Inconsistent result in edgeR by Yunshun Chen ▴ 870
You don't compare gene expression by raw counts. Use something like CPM (count-per-million) at least.
Votes
Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used
Answer: unable to access Annotationhub latest record
How to keep cells square in heatplot function of enrichplot
Answer: Inconsistent result in edgeR
A: MBDseq analysis using qsea package
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