Bioconductor Cma

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1.8k

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Classification CMA Classification CMA

updated 10.8 years ago by Sean Davis 21k • written 10.8 years ago by Guest User ★ 13k

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1.0k

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CMA CMA

11.5 years ago Guest User ★ 13k

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1.9k

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CMA DiffBind CMA DiffBind

12.8 years ago Paolo Kunderfranco ▴ 350

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1.2k

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Cancer CMA DiffBind Cancer CMA DiffBind

updated 12.8 years ago by Gordon Brown ▴ 70 • written 12.8 years ago by Paolo Kunderfranco ▴ 350

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1.3k

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CMA DiffBind CMA DiffBind

updated 12.8 years ago by Gordon Brown ▴ 70 • written 12.8 years ago by Paolo Kunderfranco ▴ 350

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1.5k

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lumi CMA lumi CMA

updated 12.8 years ago by Moshe Olshansky ▴ 260 • written 12.8 years ago by Paolo Kunderfranco ▴ 350

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1.2k

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Microarray CMA Microarray CMA

updated 13.9 years ago by Tim Triche ★ 4.2k • written 13.9 years ago by Clara Pons ▴ 30

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2.8k

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Microarray Classification limma CMA Microarray Classification limma CMA

14.3 years ago Santosh Patnaik ▴ 30

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1.0k

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CMA CMA

15.0 years ago Mike Dewar ▴ 60

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1.4k

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Classification CMA Classification CMA

15.3 years ago Javier Pérez Florido ▴ 840

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1.3k

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CMA CMA

updated 15.5 years ago by Vincent J. Carey, Jr. 6.7k • written 15.5 years ago by Paul Shannon ★ 1.1k

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1.3k

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Classification CMA Classification CMA

updated 15.6 years ago by Stephen Henderson ▴ 10 • written 15.6 years ago by Juan C Oliveros Collazos ▴ 190

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1.7k

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Microarray Classification Regression limma CMA Microarray Classification Regression limma

16.2 years ago Renaud Gaujoux ▴ 170

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1.3k

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CMA CMA

updated 16.3 years ago by Patrick Aboyoun ★ 1.6k • written 16.3 years ago by Ortiz, Maria ▴ 10

14 results • Page 1 of 1

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Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

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Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

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