Biostar Co-expression analysis

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WGCNA co-expression analysis gene significance module membership module-trait relationship

updated 10 weeks ago by annamariabugaj ▴ 10 • written 2.9 years ago by rodrigo.duarte88 ▴ 30

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Answer: Design and contrast matrices for analyzing the effect of two factors of interest by Gordon Smyth 46k

> In a typical regression, I would just add them to the model when estimating my coefficients of interest Why not do the same with limma? …

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> So you think my method in TPM normalization that I introduced above is not good? Your computation of RPKM using edgeR is fine, provided …

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Package ‘FField’ was removed from the CRAN repository.[enter link description here][1] I installed FField by using remotes::install_github…

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This solved the error, in case someone else is having compilation errors from installing RSQllite: install.packages('RSQLite', repos='http…

Comment: pathview says my nonmodel species is unknown: "species invalid" by Guido Hooiveld ★ 3.3k

A while ago a faced the same for another non-model organism. I was able to get it working using a 'hack'. This hack is nothing more than m…

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