Bioconductor Collapsereplicates

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deseq2 collapseReplicates

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by Catalina Aguilar Hurtado ▴ 90

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deseq2 collapsereplicates

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by grashow ▴ 10

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deseq2 collapseReplicates

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by gtechbio ▴ 10

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Answer: affy::rma results doesn't match with ncbi website by ATpoint ★ 4.7k

Exact OMCIS reproduction down to the values without code and software version is borderline impossible. Either use the values as provided o…

Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k

You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…

Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0

Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…

Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k

It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…

Comment: Can't post a question? by DavideSant • 0

Thank you, this was super useful!

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