Bioconductor Confounding factors

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differential gene expression nanostring confounding factors

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by Guillaume Robert • 0

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limma design matrix paired samples confounding factors

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by yuabrahamliu • 0

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Comment: Explannation for ROAST results by Jay • 0

BTW, AP1 is a character, composed of gene entrez ID, so is HIF1, UPR, etc al. And the rownames of `expr.i` is also gene entrez ID.

Comment: DESEQ2 looking at main effects while controlling for a continuous variable by Lennie • 0

Thanks James for your help! Sorry I am still a bit confused about the numerical contrast. In your example of c(0,1,0,0,0), where you are …

Answer: Merging annotation with differential expression output by James W. MacDonald 68k

This is just a general R question that you should be able to easily answer by using Google. Or you could ask on stackoverflow or biostars, …

Answer: Annotation package for Manduca sexta by shepherl 4.1k

Yes through the AnnotationHub ``` > library(AnnotationHub) > ah = AnnotationHub() snapshotDate(): 2024-10-28 > query(ah, "Manduc…

Comment: Ensembl site unresponsive via biomaRt by mdeea123 ▴ 10

Thanks for the link. I will contact them directly, I wish they had some sort of status page.

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

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