Biostar Confounding factors

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differential gene expression nanostring confounding factors

updated 2.6 years ago by James W. MacDonald 57k • written 2.6 years ago by Guillaume Robert • 0

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limma design matrix paired samples confounding factors

updated 2.8 years ago by Aaron Lun ★ 27k • written 2.8 years ago by yuabrahamliu • 0

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Comment: error with champ.load by Nidhi • 0

Hi, I am also facing error in champ.load My file is given below: Sample_Name Sample_Well Sample_Plate Sample_Group Sample_ID Pool_ID Sen…

Comment: DESeq2 - understanding intercept and contrasts by sarah-spie • 0

Thank you, dear Michael, and thank you for being so active in this forum in general! Could you have a look at this line, in which I wand to…

Answer: tximeta countsFromAbundance for downstream analysis by Michael Love 33k

The counts will not be closely correlated to the TPM across genes, because the gene length is included in the gene count but not in the TPM…

Answer: DESeq2 - understanding intercept and contrasts by Michael Love 33k

For questions on setting up the statistical design and contrasts, I recommend to consult with a local statistician or someone familiar with…

Answer: Interaction terms and selection of coef in normal and shrunk results by Michael Love 33k

Please see the diagram in the vignette on interactions, but for further questions on setting up the design, I recommend to consult with a l…

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A: plotPCA - how to add labels to a PCA plot

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Scholar to Michael Lawrence 11k