Bioconductor CuratedMetagenomicData

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MicrobiomeData curatedMetagenomicData

6 months ago • updated 5 months ago Pauline ▴ 20

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curatedMetagenomicData

updated 10 months ago by Lucas Schiffer ▴ 240 • written 10 months ago by zachary.flamholz • 0

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curatedMetagenomicData

updated 6 months ago by Lucas Schiffer ▴ 240 • written 6 months ago by pd378 • 0

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curatedMetagenomicData

updated 3 months ago by Lucas Schiffer ▴ 240 • written 3 months ago by yingliu3 • 0

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115

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curatedMetagenomicData

updated 10 weeks ago by Lucas Schiffer ▴ 240 • written 12 weeks ago by Sehyun Oh ▴ 10

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curatedMetagenomicData

6 days ago Vitor Heidrich • 0

6 results • Page 1 of 1

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Comment: Remove duplicate genera in DEseq output? by ATpoint ★ 2.9k

This seems to be very specific rather than a general and technical DESeq2 question. See the last point of https://support.bioconductor.org/…

Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Hi @mike-smith , you are correct. I was trying to select the ones that have some GO annotations by using the `with_go` filter. I was confus…

Answer: Can VST-transformed community composition data be expressed as relative abundanc by Michael Love 40k

The point of the VST is to make the data systematically homoskedastic (that is, not systematic trend of variance over mean, but not e.g. fo…

Comment: How to update a package at Bioconductor by ma79 • 0

thanks, just informed the original maintainer to send an email.

Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k

Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…

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A: Using R package 'limma' on pre-normalized counts and the effect of non-equivalen

Using R package 'limma' on pre-normalized counts and the effect of non-equivalent reads/sample on limma linear model

A: What can I do if I only have TPM but not raw counts data?

What can I do if I only have TPM but not raw counts data?

Differential expression of FPKM from RNA-seq data using limma and voom()

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Teacher to deeenes ▴ 30