Bioconductor CuratedMetagenomicData

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curatedMetagenomicData

updated 6 months ago by Levi Waldron ★ 1.1k • written 7 months ago by ua51601 • 0

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Metagenomics curatedMetagenomicData bugsigdbr

updated 9 months ago by nika.daskova • 0 • written 17 months ago by Levi Waldron ★ 1.1k

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curatedMetagenomicData ExperimentHubData

5 months ago Edward • 0

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Comment: parameters of filterByExpr by caroline.zanchi ▴ 10

Ah yes sorry :) But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…

Answer: Typo in the help of lmFit() by Gordon Smyth 52k

Thanks for the heads-up. > The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75 Yes, you're righ…

Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by caroline.zanchi ▴ 10

Thank you ! ![enter image description here][1] In the end I did ```r rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…

Answer: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by James W. MacDonald 68k

The obvious solution is to use cloud computing, which is likely cheaper than getting more RAM for your computer.

Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

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Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

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