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Comment: DESEq2 VST error by Muhammad • 0

thank you. this worked in my case.

Comment: RFC: Inconsistent software license for scran & automated license checks by matthias-doering ▴ 30

Dear Levi, Thanks for you observation. For completeness, let's consider what both GPL and AGPL say in Section 13. **[GPL-3][1], excerpt fr…

Comment: dba.count() error when re-centering peaks by njrobins • 0

Thanks a lot Rory! I wanted to follow up for a bit more information about the potential issues encountered when setting `bUseSummarizeOverl…

Comment: I cannot install "microbiome" by kikiki • 0

Thank you for reply~ ![enter image description here][1] [1]: /media/images/dab5edfa-77c6-47a1-974a-9f932a28

Comment: GSEA preranked analysis downstream of DEseq2 by hermidalc ▴ 10

Regarding GSEA preranking metric approaches, what I’ve seen, including in this thread, is that many (or most) seem to do either `logFC` or …

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Answer: DESEq2 VST error

Answer: DEGs from lfcshrink() and results()

Comment: Detection of reference genes by Deseq2

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