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Answer: Differential gene expression analysis
by
ATpoint
★
3.6k
You cannot use genotype and condition in the same model as they're nested, meaning that some genotypes are only on Fast and others are only…
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
Basti
▴
740
There is no problem, there is not any significant DMP between the groups compared.
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
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0
I realized that someone had asked the same question, but he seemed to have closed the issue and I didn't see a solution. I hope to receive …
Comment: Help with model.matrix and creating the right contrast matrix for limma
by
Gordon Smyth
48k
> Does this mean there is an anova test comparing the mean expression of each gene for each contrast specified (LvsC_m5 and HvsC_m5)? So wh…
Comment: TPM to raw counts
by
bella.johnson.2022
•
0
I know this is a bit of an old thread, but I used `'tximport'` to take my TPM output from Salmon and get the raw counts to then run DESeq2 …
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