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diffbind
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reset
3
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7
replies
922
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Genes in open chromatin region
ChIPpeakAnno
DiffBind
written 8 months ago by
Chris
▴ 10
1
vote
1
reply
166
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 28 days ago by
Michael Love
42k • written 28 days ago by
marcusn
• 0
0
votes
0
replies
134
views
dba.plotProfile() plotting and interpretation
DiffBind
25 days ago
Henry
▴ 10
0
votes
0
replies
69
views
Difference in Contrast in DiffBind
DiffBind
13 days ago
zzrammal
• 0
0
votes
0
replies
111
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
22 days ago
Dinesh
• 0
0
votes
0
replies
100
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
26 days ago
Ian D.
▴ 70
0
votes
5
replies
437
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
27 days ago • updated 4 days ago
Ian D.
▴ 70
0
votes
0
replies
105
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
26 days ago
yvonneh
• 0
8 results • Page
1 of 1
Recent ...
Replies
Answer: Counter-directional LFC shrinkage
by
swbarnes2
★ 1.4k
The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage
by
ATpoint
★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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Dario Strbenac
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shepherl
3.9k
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Robert Castelo
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kevin.rue
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Wei Shi
★ 3.6k
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