Bioconductor ChIPSeqData

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150

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ChIPSeqData genomes ChIPSeq

10 weeks ago user_bioinfo • 0

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281

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ChIPSeqData interact GenomicRanges HiC

5 months ago user_bioinfo • 0

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310

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DiffBind ChIPSeqData

8 months ago Dinesh • 0

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534

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DiffBind ChIPSeqData DESeq2

updated 8 months ago by Michael Love 43k • written 8 months ago by marcusn ▴ 10

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Genome bwamem ChIPSeqData index

updated 23 months ago by ATpoint ★ 4.6k • written 23 months ago by Maka • 0

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ChipSeq ChIPSeqData chipseqDB

2.2 years ago • updated 2.1 years ago stacy.genovese • 0

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GeneExpression ChIPSeqData

updated 2.3 years ago by James W. MacDonald 67k • written 2.3 years ago by michela ▴ 20

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DiffBind ChIPSeqData

updated 2.6 years ago by millerh1 ▴ 10 • written 3.1 years ago by sfpacman • 0

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714

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ChIPSeqData

3.2 years ago tom.dean • 0

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2.2k

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ChIPseeker ChIPSeqData

updated 4.2 years ago by James W. MacDonald 67k • written 4.2 years ago by Morris ▴ 10

10 results • Page 1 of 1

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Answer: Curiously shaped volcano plot with using oarfish + swish to do differential gene by Michael Love 43k

See swish vignette, these are explained.

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

Great thanks for posting the issue and sticking with it Annaleigh

Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0

Awesome possum! Update works!! Thank you so much for the help and guidance!

Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0

Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/

Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k

> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…

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Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Answer: Limma Interaction Effect with Covariates

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