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DNAshapeR

updated 7.2 years ago by tsupeich ▴ 30 • written 7.2 years ago by guo.xiaoyun.99 ▴ 10

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DNAshapeR

updated 7.8 years ago by tsupeich ▴ 30 • written 7.8 years ago by Bioinformatist Newbie • 0

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dnashaper

updated 6.7 years ago by Martin Morgan 25k • written 6.7 years ago by tsupeich ▴ 30

3 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

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Answer: fgsea significant result

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