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GDCdow tcgabiolinks error tcgadownload download_error

updated 4.8 years ago by Tiago Chedraoui Silva ▴ 260 • written 4.8 years ago by miki716 • 0

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annotationhub download_error

updated 6.0 years ago by James W. MacDonald 63k • written 6.0 years ago by vitay.dora • 0

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IdeoViz UCSC download_error

6.6 years ago kaleb.gatto • 0

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Comment: Problems with FLOWAI by SHASHI • 0

please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA

Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…

Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k

The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…

Answer: Remove duplicates of colData in TreeSummarizedExperiment by Michael Love 40k

Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…

Comment: DataFrame Construction With Non-standard Column by James W. MacDonald 63k

Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …

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A: LIMMA dupcor() function time issue.

A: collapseReplicates in DESeq2

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