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Comment: I want to know how to analyze TCGA data with maftools.
by
Marcel Ramos
570
You would have to get the appropriate data from a service such as the Genomic Data Commons Data Portal. [https://portal.gdc.cancer.gov/][1…
Comment: Extract specific portion of a string and paste to a new column in R
by
Marcel Ramos
570
This post does not fit the theme of this forum.
Comment: Extract specific portion of a string and paste to a new column in R
by
Marcel Ramos
570
Please direct your question to another website such as stackoverflow.com. Be sure to include: * reproducible example * the explicit result…
Comment: MBD-seq non model species
by
Simon Pearce
• 0
If you have a `BSgenome` object then reading your data into MEDIPS/QSEA (although I would recommend QSEA) would let you look where the read…
Answer: errors in annotation
by
James W. MacDonald
60k
Thanks for pointing that out. However, it is unlikely that this is an error on our part, as we simply process the data we can get from publ…
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Answer: Extract specific portion of a string and paste to a new column in R
Answer: lapply for GRanges
Answer: paired samples, comparing expression given a continuous variable
Answer: paired samples, comparing expression given a continuous variable
A: log2FoldChange calculation in DESeq2 output
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