Bioconductor EisaR

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eisaR Rhisat2

updated 3.6 years ago by Michael Stadler ▴ 350 • written 3.6 years ago by nishanthemje • 0

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eisaR

updated 3.7 years ago by Charlotte Soneson ▴ 170 • written 3.7 years ago by nishanthemje • 0

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eisaR edgeR

updated 3.7 years ago by Gordon Smyth 50k • written 3.7 years ago by nishanthemje • 0

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eisaR

updated 3.7 years ago by Charlotte Soneson ▴ 170 • written 3.7 years ago by nishanthemje • 0

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Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…

Answer: GSVA function by Robert Castelo ★ 3.3k

Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …

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Answer: How to run allelic imbalance in apeglm

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Answer: Documenting resources in an `ExperimentHub` package?

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Seurat/DESeq2 - single cell RNA-seq differential expression

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Popular Question to Robert Castelo ★ 3.3k