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elmer
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Identify significantly different DNA methylation probes in tumor and normal samples GBM ELMER R package
ELMER
TCGA
GEO
20 months ago
andrade4beatriz
• 0
3
votes
4
replies
699
views
ELMER::createMAE() Error: $ operator is invalid for atomic vectors
ELMER
2.9 years ago
D
• 0
0
votes
3
replies
488
views
Duplicate issue in ELMER get.pair for HNSC data
HNSC
ELMER
3.5 years ago
ghafarpour
• 0
0
votes
1
reply
680
views
error with ELMER package
software error
ELMER
updated 6.1 years ago by
lijingya
• 0 • written 6.1 years ago by
mcastrod
• 0
4 results • Page
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Comment: broken chain import in liftOver
by
Marcel Ramos
570
You could also try using one of the chain files in `AnnotationHub`, which gets auto-cached: ```r library(AnnotationHub) query(ah <- Annot…
Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.
by
James W. MacDonald
59k
See `removeBatchEffect` in the `limma` package.
Comment: GDCdownload Directory Problem :(
by
Marcel Ramos
570
FWIW, `TCGAutils` is not a related package.
Comment: help please!
by
1051444231
• 0
I have updated Rtools
Comment: help please!
by
1051444231
• 0
> BiocManager::install("AnnotationDbi",force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' …
Votes
Answer: broken chain import in liftOver
Answer: toGRanges help!
Answer: toGRanges help!
Comment: CPM after RUVseq
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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