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Comment: Confused about using RUVg in getting negative control genes using RUVg by Mohamed • 0

Thanks a lot for these valuable information...

Comment: Using Age or other numerical variable to model expression in deseq2 by JAcky • 0

If I understood correctly, you want to see the results, right? res = results(dds) summary(res) And then just view the genes on …

Comment: Trouble importing my own Gene Ontology Annotation into topGO by Raito92 ▴ 60

Thanks for your answer! Oddly enough, I solved the problem by simply taking the system.file function and package = "topGO" parameter out.…

Comment: Bioconducter can not be installed on latest RStudio by Mike Smith ★ 5.6k

There's very little information to work with here, but my guess is that you're missing some linux system libraries. The **xml2** package r…

Answer: Using queryMany() in mygene package: Problem of querying Entrez gene IDs based o by Guido Hooiveld ★ 3.3k

I am not familiar with the package `mygene`, but please note that unigene has been retired 3 years ago! https://ncbiinsights.ncbi.nlm.nih.g…

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