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Answer: Diffbind analysis of ATAC-seq data
This is showing that all of the open chromatin changes are in the same "direction": sites that are open in the `aa` condition only. There a…
Comment: How to get DESeq2 results for a list of genes
Just to weigh in here, @atpoint does volunteer a lot of time helping new users on the Bioconductor support site, and I don't see his post a…
Comment: DiffBind: GreyListChIP error: Error: $ operator is invalid for atomic vectors
I would welcome the opportunity to debug this issue if you were willing to send me your DBA object `dba` and a link to a place I could acce…
Comment: During dba(sampleSheet = "samples.csv") step, Error in mergeScores(merged, def,
I see the `PeakCaller` is set to `macs`, are your peak files the `.xls` files generated by `MACS`? If they are, it would help to see your…
Answer: how do singleton samples contribute to dispersion estimate in DESeq2?
For that type of design, they do not really just much information about the dispersion. But the dispersion estimates are MLE and not based …
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
Answer: Error message: Could not find function "DESeqDataSetFromMatrix"
XVector installation fails because zlib.h is not found
A: what is fitProbeLevelModel()? doing
Answer: How fix lines of dendrogram that overlap in the column portion of a heatmap?
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