updated 22 days ago by
Michael Love
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written 23 days ago by
nafsa
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Comment: MBD-seq non model species
by
Simon Pearce
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If you have a `BSgenome` object then reading your data into MEDIPS/QSEA (although I would recommend QSEA) would let you look where the read…
Answer: errors in annotation
by
James W. MacDonald
60k
Thanks for pointing that out. However, it is unlikely that this is an error on our part, as we simply process the data we can get from publ…
Answer: DESeq errpr in normalizePath
by
Michael Love
37k
Can you show the command that produced this error?
Also can you run `traceback()` after the error?
Comment: paired samples, comparing expression given a continuous variable
by
naz
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Thank you for your help, Dr. Smyth. I appreciate your insights and I will adjust my analysis as you recommend.
Answer: paired samples, comparing expression given a continuous variable
by
Gordon Smyth
46k
You are including too many terms in the linear model. TimePoint and Total.Score give almost the same information. You can include either on…
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