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Answer: Heatmap of rnaseq data with z-score scale
by
James W. MacDonald
68k
Without including the row names for the heatmap, it's impossible to know if the directionality is switched or not. Do note that the orderin…
Comment: Heatmap of rnaseq data with z-score scale
by
giovanna
•
0
![Figure1][1]![Figure2][2]
[1]: /media/images/d62918c5-2886-44ae-930d-91d292c3
[2]: /media/images/421df232-8a9c-4016-bc4a-431ca57a
Comment: parameters of filterByExpr
by
caroline.zanchi
▴
10
Ah yes sorry :)
But then I still do not understand why is it that on the plot I attached, the gene definitely has non-0 counts in less than…
Answer: Typo in the help of lmFit()
by
Gordon Smyth
52k
Thanks for the heads-up.
> The _Details_ in the documentation of lmFit() still says that the default correlation is 0.75
Yes, you're righ…
Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
by
caroline.zanchi
▴
10
Thank you !
![enter image description here][1]
In the end I did
```r
rn2 <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "GENENAME"…
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