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Comment: [limma::kegga] Pathway names all NA
by
andrewsm
•
0
Thank you Gordon for the quick response. I saw something along those lines in the NEWS notes so did try
```{r}
BiocManager:install("limma"…
Comment: Time-course, comparison of two groups
by
Gordon Smyth
47k
With 4 time points there are 3 df between time points, so your spline analysis with `df=3` is exactly the same as if you had treated time a…
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
by
tahir.msajid
•
0
Hi Rory,
I am normalizing the counts with the following options:
`normalized <- dba.normalize(counts, method=DBA_DESEQ2, normalize = DBA_N…
Answer: [limma::kegga] Pathway names all NA
by
Gordon Smyth
47k
This is due to a change in the KEGG website. I updated limma a month ago to fix the problem, so just reinstall limma and the problem will b…
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
by
tahir.msajid
•
0
That's great. Thank you for clarifying the confusion.
Cheers,
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