Biostar Genomicscores

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2

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4

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GenomicScores

29 days ago • updated 27 days ago Robert • 0

3

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15

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732

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GenomicScores MafH5.gnomAD.v3.1.1.GRCh38

updated 7 weeks ago by Robert Castelo ★ 2.9k • written 4 months ago by Robert • 0

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6

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GenomicScores

updated 10 months ago by Robert Castelo ★ 2.9k • written 10 months ago by nattzy94 ▴ 20

7

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13

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genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer

updated 2.4 years ago by Robert Castelo ★ 2.9k • written 2.4 years ago by Biologist ▴ 90

4 results • Page 1 of 1

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Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 1000

All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…

Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k

The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10

Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Alejandro Reyes ★ 1.8k

Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…

Answer: spot- vs cell-level data access by Leonardo Collado Torres ▴ 1000

Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…

Votes

Answer: spot- vs cell-level data access

Answer: unable to install.packages("spatialLIBD")

Comment: unable to install.packages("spatialLIBD")

error running UniProt.ws

Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU

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