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genomicscores
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MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
GenomicScores
29 days ago • updated 27 days ago
Robert
• 0
3
votes
15
replies
732
views
subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
GenomicScores
MafH5.gnomAD.v3.1.1.GRCh38
updated 7 weeks ago by
Robert Castelo
★ 2.9k • written 4 months ago by
Robert
• 0
0
votes
6
replies
669
views
GenomicScores package: availableGScores and getGScores functions not working
GenomicScores
updated 10 months ago by
Robert Castelo
★ 2.9k • written 10 months ago by
nattzy94
▴ 20
7
votes
13
replies
1.1k
views
How to extract phastcons score for all protein coding genes and lncRNAs using GenomicScores?
genomicscores
granges
phastCons100way.UCSC.hg38
r
rtracklayer
updated 2.4 years ago by
Robert Castelo
★ 2.9k • written 2.4 years ago by
Biologist
▴ 90
4 results • Page
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Comment: unable to install.packages("spatialLIBD")
by
Leonardo Collado Torres
▴ 1000
All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…
Answer: how to use Rsamtools to parse extra fields from STAR alignment
by
Martin Morgan
25k
The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Delta._.43
▴ 10
Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Alejandro Reyes
★ 1.8k
Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…
Answer: spot- vs cell-level data access
by
Leonardo Collado Torres
▴ 1000
Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…
Votes
Answer: spot- vs cell-level data access
Answer: unable to install.packages("spatialLIBD")
Comment: unable to install.packages("spatialLIBD")
error running UniProt.ws
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
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