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How to get The evolutionary conservation scores for lncRNAs by the phastCons100way.UCSC.hg38 (3.7.1) R package
txdbmaker GenomicScores phastCons100way.UCSC.hg38 GenomicFeatures
16 days ago • updated 11 days ago rania.alanany • 0
2
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5
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MafH5.gnomAD.v3.1.2.GRCh38 omitted indels
GenomicScores
updated 2.2 years ago by ★ 3.4k • written 2.4 years ago by • 0
3
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15
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subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38
GenomicScores MafH5.gnomAD.v3.1.1.GRCh38
updated 2.5 years ago by ★ 3.4k • written 2.7 years ago by • 0
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GenomicScores package: availableGScores and getGScores functions not working
GenomicScores
updated 3.2 years ago by ★ 3.4k • written 3.2 years ago by ▴ 20
7
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How to extract phastcons score for all protein coding genes and lncRNAs using GenomicScores?
genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer
updated 15 days ago by • 0 • written 4.7 years ago by ▴ 120
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Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k
Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …
Comment: rrvgo::calculateSimMatrix() error by Phila • 0
Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/
Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170
For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…
Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.
Comment: Differential Expression Genes as Independent Variables by Gordon Smyth 52k
Such an analysis cannot be done in limma. Sorry, I cannot tell you how to do it or even whether it is possible.
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Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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