Bioconductor GetSequence

Showing : getSequence • reset

1

vote

1

reply

898

views

ensembldb getSequence

updated 13 months ago by Mike Smith ★ 6.6k • written 13 months ago by Melanie ▴ 10

4

votes

4

replies

3.0k

views

biomart getSequence genomic coordinates ENSEMBL bug report

updated 5.6 years ago by Mike Smith ★ 6.6k • written 5.6 years ago by Ni-Ar ▴ 10

0

votes

2

replies

1.3k

views

getsequence

updated 6.9 years ago by roxys9150 • 0 • written 6.9 years ago by Teeps • 0

1

vote

0

replies

1.5k

views

biomart error plants_mart getSequence

7.9 years ago vsn ▴ 10

4 results • Page 1 of 1

Recent ...

Replies

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Thank you so much for your helpful response! I have a follow-up question regarding preprocessing of the count matrix. Should steps like ge…

Comment: readDNAStringSet with non DNA characters by Aidan ▴ 60

I would try to avoid converting to and from `character` objects, you'll lose the main point of having objects as `XString`/`XStringSet`. `…

Comment: DESeq2 interactions by James W. MacDonald 68k

While it looks correct, that response came from a spam bot.

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by Kateřina • 0

Thank you so much!

Answer: readDNAStringSet with non DNA characters by ATpoint ★ 4.9k

See `?readDNAStringSet` which will tell that for DNAStringSet only valid characters are allowed. You can use `BStringSet` (`readBStringSet(…

Votes

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Awards • All