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glimma
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5
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4
replies
1.9k
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Glimma Interactive plots for RNAseq
Glimma
R markdown
rnaseq
7.2 years ago
Aurora
▴ 20
1
vote
3
replies
1.9k
views
problem installing the Glimma package
glimma
7.1 years ago
omran.allatif
• 0
7
votes
6
replies
1.9k
views
BiocStyle::html_document does not render Glimma plots
Glimma
BiocStyle
updated 2.8 years ago by
Mike Smith
★ 6.6k • written 2.8 years ago by
neilzhao
▴ 30
0
votes
0
replies
1.4k
views
Glimma: Error: Length of groups must be equal to the number of columns in counts
Glimma
RNASeq
3.3 years ago
Jonas
• 0
2
votes
2
replies
1.4k
views
What to do when a bug is found in a BioConductor package (Glimma)
glimma
software error
updated 5.7 years ago by
Gordon Smyth
52k • written 5.7 years ago by
Sam
▴ 10
0
votes
2
replies
1.3k
views
glimmaMA() produces blank plot if have annot column named "gene"
Glimma
updated 3.1 years ago by
Shian Su
▴ 40 • written 3.9 years ago by
Jenny Drnevich
★ 2.0k
1
vote
2
replies
1.3k
views
bug in Glimma - anno can't have T/F
Glimma
8.8 years ago
Jenny Drnevich
★ 2.0k
1
vote
1
reply
1.1k
views
Extracting the tophits from limma Volcanoplot and issue with geneIDs
limma
edgeR
Glimma
updated 2.3 years ago by
Gordon Smyth
52k • written 2.3 years ago by
Mohammad
• 0
0
votes
1
reply
1.1k
views
Why does the Glimma package require R >= 3.4.0 ?
glimma
updated 7.1 years ago by
Shian Su
▴ 40 • written 7.1 years ago by
gil.hornung
• 0
0
votes
0
replies
737
views
Complex design in DESeq2 doesn't seem to be supported in Glimma
limma
Glimma
RNASeq
DESeq2
3.3 years ago
Jonas
• 0
10 results • Page
1 of 1
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Replies
Comment: Intepretation of results
by
Tom
• 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis
by
Tom
• 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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