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glmGamPoi
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Dispersion estimation step is very slow with latest DESeq2 and glmGamPoi
DESeq2
glmGamPoi
8 weeks ago • updated 7 weeks ago
I-Hsuan Lin
▴ 10
8
votes
7
replies
1.7k
views
Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
DESeq2
glmGamPoi
DEXSeq
updated 9 months ago by
alexandresegers
▴ 20 • written 18 months ago by
jeremymsimon
▴ 20
1
vote
1
reply
1.6k
views
Instaling glmGamPoi
glmGamPoi
updated 17 months ago by
ATpoint
★ 4.0k • written 17 months ago by
sina.tadayon
• 0
0
votes
3
replies
1.1k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi
BiocManager
updated 17 months ago by
Vincent J. Carey, Jr.
6.7k • written 17 months ago by
i.am.filippov
• 0
5
votes
4
replies
2.1k
views
Using DESeq2 with GlmGamPoi
DESeq2
glmGamPoi
scRNAseq
3.1 years ago
tatyana.perlova
• 0
5 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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