Bioconductor Glmgampoi

Showing : glmgampoi • reset

vote

replies

765

views

DESeq2 independentfiltering glmGamPoi

8 weeks ago • updated 4 weeks ago Bob ▴ 10

vote

replies

754

views

DESeq2 glmGamPoi offset edgeR scRNAseq

updated 3 months ago by Gordon Smyth 51k • written 3 months ago by Alec • 0

vote

replies

567

views

DESeq2 glmGamPoi

7 months ago I-Hsuan Lin ▴ 10

votes

replies

2.2k

views

DESeq2 glmGamPoi DEXSeq

updated 15 months ago by alexandresegers ▴ 20 • written 23 months ago by jeremymsimon ▴ 20

vote

1.9k

views

glmGamPoi

updated 22 months ago by ATpoint ★ 4.5k • written 22 months ago by sina.tadayon • 0

votes

replies

1.4k

views

glmGamPoi BiocManager

updated 23 months ago by Vincent J. Carey, Jr. 6.7k • written 23 months ago by i.am.filippov • 0

votes

replies

2.5k

views

DESeq2 glmGamPoi scRNAseq

3.6 years ago tatyana.perlova • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

These are both hard to call for me, looking at the plots. It ends up depending on the information sharing from the rest of the genes, and t…

Comment: heatmap with batch effect by tothuhien • 0

ok I got it, thank you very much. That was very helpful.

Comment: Highly DE genes but small count difference within conditions by bioshot.com • 0

The lfc of Eif3j1 is around -2.5, i tried with and without shrinkage but didn't change for those genes. What about Slfn5?

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

Eif3j1 is a hard case, although there is separation here, there is also substantial spread. The posterior LFC is probably not that large? `…

Comment: heatmap with batch effect by James W. MacDonald 67k

When you use `removeBatchEffect` it is simply computing the mean expression for each group and subtracting that out. If you have variabilit…

Votes

GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

Awards • All

Scholar to ATpoint ★ 4.5k