Showing : glmtreat • reset
6
votes
6
replies
2.4k
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go DE edger rnaseq glmTreat
updated 4.6 years ago by 51k • written 4.6 years ago by ▴ 60
5
votes
5
replies
2.2k
views
interpreting FC values from glmTreat, especially unshrunk log-fold-changes
edgeR glmTreat significance testing
updated 5.0 years ago by ▴ 870 • written 5.0 years ago by • 0
3
votes
3
replies
1.4k
views
Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysis
edger differential gene expression glmtreat
updated 6.0 years ago by 51k • written 6.1 years ago by ▴ 830
0
votes
5
replies
1.7k
views
glmTreat Errors for multi coefficient and analysis of deviance situations.
edgeR glmTreat analysis of deviance
updated 7.0 years ago by ★ 7.9k • written 7.0 years ago by ▴ 80
3
votes
2
replies
1.4k
views
ROAST after edgeR glmTreat and average RPKM filter
roast edgeR glmtreat
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 370
1
vote
1
reply
1.2k
views
Treat p > 1
edgeR glmTreat
updated 8.4 years ago by ▴ 870 • written 8.4 years ago by 67k
6 results • Page 1 of 1
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Comment: [How to construct a model.matrix ] by kyj2226 • 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Votes
Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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