Bioconductor Glmtreat

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2.4k

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go DE edger rnaseq glmTreat

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Raito92 ▴ 60

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2.2k

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edgeR glmTreat significance testing

updated 5.1 years ago by Yunshun Chen ▴ 900 • written 5.1 years ago by flemi221 • 0

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1.4k

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edger differential gene expression glmtreat

updated 6.1 years ago by Gordon Smyth 52k • written 6.1 years ago by svlachavas ▴ 840

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1.7k

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edgeR glmTreat analysis of deviance

updated 7.0 years ago by Ryan C. Thompson ★ 7.9k • written 7.0 years ago by BharathAnanth ▴ 80

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1.4k

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roast edgeR glmtreat

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by b.nota ▴ 370

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1.2k

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edgeR glmTreat

updated 8.5 years ago by Yunshun Chen ▴ 900 • written 8.5 years ago by James W. MacDonald 67k

6 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

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Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k