Bioconductor Roast

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roast DESeq2 GeneSetEnrichment

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by prabin.dm • 0

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roast fry limma

updated 5.9 years ago by Gordon Smyth 52k • written 5.9 years ago by kentfung ▴ 20

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mroast limma roast

6.5 years ago SB • 0

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limma roast statistics source code gene set testing

6.7 years ago Andrea Carenzo • 0

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roast limma

7.0 years ago b.nota ▴ 370

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roast edgeR glmtreat

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by b.nota ▴ 370

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limma roast mroast block

updated 8.9 years ago by Ryan C. Thompson ★ 7.9k • written 8.9 years ago by barbara.shih • 0

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mroast roast gene set gene set analysis edgeR

updated 9.0 years ago by James W. MacDonald 68k • written 9.0 years ago by lattalic • 0

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1.7k

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edgeR mroast roast

9.0 years ago lattalic • 0

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1.6k

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limma romer roast

updated 9.4 years ago by Gordon Smyth 52k • written 9.4 years ago by biominer ▴ 10

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2.2k

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gene set testing roast mroast differential gene expression bioconductor

10.0 years ago svlachavas ▴ 840

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edger roast

updated 10.5 years ago by Gordon Smyth 52k • written 10.5 years ago by Daniel ▴ 10

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4.4k

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limma roast

updated 10.6 years ago by Gordon Smyth 52k • written 10.6 years ago by Juliet Hannah ▴ 360

13 results • Page 1 of 1

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Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k

``` library(org.Dm.eg.db) rn <- select(org.Dm.eg.db, row.names(cent_expr_matrix), "SYMBOL","FLYBASE") ## ensure no NA values get propaga…

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your explanation, that makes sense. Do you have any suggestions on how to deal with this issue? if it is an issue? especially…

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by nytwordlehints • 0

I have always had a great fondness for games, so witnessing their transformation into animated versions is truly a delightful experience. […

Comment: FlowSOM is unable to create Output by EvangelinePope • 0

I will remember it, Thank you so much for sharing.

Answer: Limma suqeezeVar by Gordon Smyth 52k

I am not quite clear why you're not using the limma package directly, because it will compute all the variances and the df automatically fo…

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Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm

Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

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