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roast
•
reset
1
vote
3
replies
458
views
ROAST compare results with complex design
limma
mroast
roast
CAMERA
written 5 months ago by
Jiahao Tian
• 0
3
votes
2
replies
2.2k
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 5.2 years ago by
Gordon Smyth
53k • written 5.2 years ago by
prabin.dm
• 0
2
votes
2
replies
2.8k
views
Finding genes in a gene set detected by ROAST (or FRY) in limma
roast
fry
limma
updated 6.6 years ago by
Gordon Smyth
53k • written 6.6 years ago by
kentfung
▴ 20
4
votes
4
replies
2.1k
views
Interpreting mroast results
mroast
limma
roast
7.2 years ago
SB
• 0
1
vote
4
replies
1.9k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
7.5 years ago
Andrea Carenzo
• 0
2
votes
2
replies
2.1k
views
limma roast results not in accordance with barcodeplot
roast
limma
7.8 years ago
b.nota
▴ 370
3
votes
2
replies
1.7k
views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
updated 9.5 years ago by
Aaron Lun
★ 29k • written 9.5 years ago by
b.nota
▴ 370
2
votes
2
replies
1.9k
views
limma roast/mroast with patient-matched pre-/post- treatment
limma
roast
mroast
block
updated 9.6 years ago by
Ryan C. Thompson
★ 7.9k • written 9.6 years ago by
barbara.shih
• 0
2
votes
2
replies
1.7k
views
Running Roast with Gene Symbols of Curated Genes
mroast
roast
gene set
gene set analysis
edgeR
updated 9.7 years ago by
James W. MacDonald
68k • written 9.7 years ago by
lattalic
• 0
0
votes
3
replies
2.0k
views
ROAST using curated gene sets
edgeR
mroast
roast
9.7 years ago
lattalic
• 0
2
votes
1
reply
1.7k
views
limma symbols2indices from gmt files versus rdata files
limma
romer
roast
updated 10.1 years ago by
Gordon Smyth
53k • written 10.1 years ago by
biominer
▴ 10
6
votes
10
replies
2.7k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
10.8 years ago
svlachavas
▴ 840
3
votes
4
replies
3.2k
views
edgeR: no replicates & mroast
edger
roast
updated 11.3 years ago by
Gordon Smyth
53k • written 11.3 years ago by
Daniel
▴ 10
4
votes
6
replies
4.7k
views
limma roast syntax and interpretation
limma
roast
updated 11.3 years ago by
Gordon Smyth
53k • written 11.3 years ago by
Juliet Hannah
▴ 360
14 results • Page
1 of 1
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Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
James W. MacDonald
68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
Votes
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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