Bioconductor Roast

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roast DESeq2 GeneSetEnrichment

updated 3.8 years ago by Gordon Smyth 51k • written 3.8 years ago by prabin.dm • 0

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roast fry limma

updated 5.3 years ago by Gordon Smyth 51k • written 5.3 years ago by kentfung ▴ 20

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mroast limma roast

5.9 years ago SB • 0

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limma roast statistics source code gene set testing

6.1 years ago Andrea Carenzo • 0

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roast limma

6.4 years ago b.nota ▴ 370

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roast edgeR glmtreat

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by b.nota ▴ 370

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limma roast mroast block

updated 8.3 years ago by Ryan C. Thompson ★ 7.9k • written 8.3 years ago by barbara.shih • 0

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1.3k

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mroast roast gene set gene set analysis edgeR

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by lattalic • 0

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1.6k

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edgeR mroast roast

8.4 years ago lattalic • 0

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1.4k

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limma romer roast

updated 8.8 years ago by Gordon Smyth 51k • written 8.8 years ago by biominer ▴ 10

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2.0k

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gene set testing roast mroast differential gene expression bioconductor

9.4 years ago svlachavas ▴ 830

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edger roast

updated 9.9 years ago by Gordon Smyth 51k • written 9.9 years ago by Daniel ▴ 10

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4.1k

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limma roast

updated 10.0 years ago by Gordon Smyth 51k • written 10.0 years ago by Juliet Hannah ▴ 360

13 results • Page 1 of 1

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Comment: Diffenrent result from EMBOSS needle and Biostrings pairwiseAlignment ? by rohitsatyam102 ▴ 20

I am facing a similar issue.

Answer: How to subset voomLmFit (MArrayLM) object? by Gordon Smyth 51k

Yes, the current behaviour is absolutely intentional. It doesn't seem to me to be meaningful or useful to try to subset the EList object au…

Answer: Need help interpreting heatmaps from limma by James W. MacDonald 67k

Heatmaps don't do any comparisons. They just plot the underlying data in a matrix and color the blocks based (in your case) on the by-gene …

Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10

I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…

Answer: featureCounts fails to load annotation file by James W. MacDonald 67k

I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…

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A: eBayes warning: zero sample variances

Answer: Are transformed values from rlog /vst log2 normalized counts?

Comment: Are transformed values from rlog /vst log2 normalized counts?

Awards • All

Popular Question to Gerhard Thallinger ▴ 180

Popular Question to rohitsatyam102 ▴ 20

Scholar to James W. MacDonald 67k