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roast
•
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1
vote
3
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451
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ROAST compare results with complex design
limma
mroast
roast
CAMERA
written 5 months ago by
Jiahao Tian
• 0
3
votes
2
replies
2.2k
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 5.2 years ago by
Gordon Smyth
53k • written 5.2 years ago by
prabin.dm
• 0
2
votes
2
replies
2.8k
views
Finding genes in a gene set detected by ROAST (or FRY) in limma
roast
fry
limma
updated 6.6 years ago by
Gordon Smyth
53k • written 6.6 years ago by
kentfung
▴ 20
4
votes
4
replies
2.1k
views
Interpreting mroast results
mroast
limma
roast
7.2 years ago
SB
• 0
1
vote
4
replies
1.9k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
7.5 years ago
Andrea Carenzo
• 0
2
votes
2
replies
2.1k
views
limma roast results not in accordance with barcodeplot
roast
limma
7.8 years ago
b.nota
▴ 370
3
votes
2
replies
1.7k
views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
updated 9.5 years ago by
Aaron Lun
★ 29k • written 9.5 years ago by
b.nota
▴ 370
2
votes
2
replies
1.9k
views
limma roast/mroast with patient-matched pre-/post- treatment
limma
roast
mroast
block
updated 9.6 years ago by
Ryan C. Thompson
★ 7.9k • written 9.6 years ago by
barbara.shih
• 0
2
votes
2
replies
1.7k
views
Running Roast with Gene Symbols of Curated Genes
mroast
roast
gene set
gene set analysis
edgeR
updated 9.7 years ago by
James W. MacDonald
68k • written 9.7 years ago by
lattalic
• 0
0
votes
3
replies
2.0k
views
ROAST using curated gene sets
edgeR
mroast
roast
9.7 years ago
lattalic
• 0
2
votes
1
reply
1.7k
views
limma symbols2indices from gmt files versus rdata files
limma
romer
roast
updated 10.1 years ago by
Gordon Smyth
53k • written 10.1 years ago by
biominer
▴ 10
6
votes
10
replies
2.7k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
10.8 years ago
svlachavas
▴ 840
3
votes
4
replies
3.2k
views
edgeR: no replicates & mroast
edger
roast
updated 11.3 years ago by
Gordon Smyth
53k • written 11.3 years ago by
Daniel
▴ 10
4
votes
6
replies
4.7k
views
limma roast syntax and interpretation
limma
roast
updated 11.3 years ago by
Gordon Smyth
53k • written 11.3 years ago by
Juliet Hannah
▴ 360
14 results • Page
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Replies
Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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