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roast
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1
vote
3
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425
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ROAST compare results with complex design
limma
mroast
roast
CAMERA
written 5 months ago by
Jiahao Tian
• 0
3
votes
2
replies
2.1k
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 5.1 years ago by
Gordon Smyth
53k • written 5.1 years ago by
prabin.dm
• 0
2
votes
2
replies
2.8k
views
Finding genes in a gene set detected by ROAST (or FRY) in limma
roast
fry
limma
updated 6.6 years ago by
Gordon Smyth
53k • written 6.6 years ago by
kentfung
▴ 20
4
votes
4
replies
2.1k
views
Interpreting mroast results
mroast
limma
roast
7.2 years ago
SB
• 0
1
vote
4
replies
1.9k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
7.5 years ago
Andrea Carenzo
• 0
2
votes
2
replies
2.1k
views
limma roast results not in accordance with barcodeplot
roast
limma
7.8 years ago
b.nota
▴ 370
3
votes
2
replies
1.7k
views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
updated 9.4 years ago by
Aaron Lun
★ 29k • written 9.4 years ago by
b.nota
▴ 370
2
votes
2
replies
1.9k
views
limma roast/mroast with patient-matched pre-/post- treatment
limma
roast
mroast
block
updated 9.6 years ago by
Ryan C. Thompson
★ 7.9k • written 9.6 years ago by
barbara.shih
• 0
2
votes
2
replies
1.7k
views
Running Roast with Gene Symbols of Curated Genes
mroast
roast
gene set
gene set analysis
edgeR
updated 9.7 years ago by
James W. MacDonald
68k • written 9.7 years ago by
lattalic
• 0
0
votes
3
replies
2.0k
views
ROAST using curated gene sets
edgeR
mroast
roast
9.7 years ago
lattalic
• 0
2
votes
1
reply
1.7k
views
limma symbols2indices from gmt files versus rdata files
limma
romer
roast
updated 10.1 years ago by
Gordon Smyth
53k • written 10.1 years ago by
biominer
▴ 10
6
votes
10
replies
2.6k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
10.7 years ago
svlachavas
▴ 840
3
votes
4
replies
3.1k
views
edgeR: no replicates & mroast
edger
roast
updated 11.2 years ago by
Gordon Smyth
53k • written 11.2 years ago by
Daniel
▴ 10
4
votes
6
replies
4.7k
views
limma roast syntax and interpretation
limma
roast
updated 11.3 years ago by
Gordon Smyth
53k • written 11.3 years ago by
Juliet Hannah
▴ 360
14 results • Page
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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics
by
mudasarnaeem2020
• 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error
by
a2sahaaaq2c
• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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