Bioconductor Roast

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991

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roast DESeq2 GeneSetEnrichment

updated 2.8 years ago by Gordon Smyth 48k • written 2.8 years ago by prabin.dm • 0

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1.2k

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roast fry limma

updated 4.2 years ago by Gordon Smyth 48k • written 4.2 years ago by kentfung ▴ 10

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1.1k

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mroast limma roast

4.8 years ago SB • 0

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limma roast statistics source code gene set testing

5.1 years ago Andrea Carenzo • 0

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1.3k

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roast limma

5.4 years ago b.nota ▴ 360

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1.0k

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roast edgeR glmtreat

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by b.nota ▴ 360

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1.1k

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limma roast mroast block

updated 7.2 years ago by Ryan C. Thompson 7.8k • written 7.2 years ago by barbara.shih • 0

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1.0k

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mroast roast gene set gene set analysis edgeR

updated 7.3 years ago by James W. MacDonald 63k • written 7.3 years ago by lattalic • 0

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1.2k

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edgeR mroast roast

7.3 years ago lattalic • 0

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1.1k

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limma romer roast

updated 7.7 years ago by Gordon Smyth 48k • written 7.7 years ago by biominer ▴ 10

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1.6k

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gene set testing roast mroast differential gene expression bioconductor

8.4 years ago svlachavas ▴ 810

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2.1k

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edger roast

updated 8.8 years ago by Gordon Smyth 48k • written 8.8 years ago by Daniel ▴ 10

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3.5k

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limma roast

updated 8.9 years ago by Gordon Smyth 48k • written 8.9 years ago by Juliet Hannah ▴ 360

13 results • Page 1 of 1

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Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…

Votes

Answer: DMRcate design

Comment: DMRcate design

Answer: What MetaPhlAn3 database was used in cMD 3?

Comment: Speeding up of DelayedArray::write_block()

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