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glmTreat
•
reset
6
votes
6
replies
751
views
GO enrichment analysis with goana after performing DE analysis with glmTreat
go
DE
edger
rnaseq
glmTreat
updated 2.1 years ago by
Gordon Smyth
45k • written 2.1 years ago by
Raito92
▴ 60
5
votes
5
replies
817
views
interpreting FC values from glmTreat, especially unshrunk log-fold-changes
edgeR
glmTreat
significance testing
updated 2.5 years ago by
Yunshun Chen
▴ 770 • written 2.5 years ago by
flemi221
• 0
3
votes
3
replies
595
views
Apply different cutoffs with edgeR pipeline and glmTreat for RNA-Seq DEG analysis
edger
differential gene expression
glmtreat
updated 3.6 years ago by
Gordon Smyth
45k • written 3.6 years ago by
svlachavas
▴ 780
0
votes
5
replies
903
views
glmTreat Errors for multi coefficient and analysis of deviance situations.
edgeR
glmTreat
analysis of deviance
updated 4.5 years ago by
Ryan C. Thompson
7.8k • written 4.5 years ago by
BharathAnanth
▴ 70
3
votes
2
replies
805
views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
updated 5.7 years ago by
Aaron Lun
★ 27k • written 5.7 years ago by
b.nota
▴ 360
1
vote
1
reply
646
views
Treat p > 1
edgeR
glmTreat
updated 5.9 years ago by
Yunshun Chen
▴ 770 • written 6.0 years ago by
James W. MacDonald
59k
6 results • Page
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Comment: Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI()
by
Lan Anh
• 0
Hello, Sorry for the late answer, I called several packages after my error and I do not know how it worked after that. Thank you for the h…
Comment: LogFC values in edgeR - w/wo intercept
by
JK Kim
• 0
Thanks, Dr. Smyth!
Comment: LogFC values in edgeR - w/wo intercept
by
JK Kim
• 0
Oops. I just corrected the URL. Thank you Dr. Smyth.
Comment: Fail to run RupRadar
by
Qingwei
• 0
Dear Sergi, Yeah, it works. ```r dm <- analyzeDuprates(bamDuprm,gtf,stranded,paired,threads, GTF.featureType="cDNA_match", GTF.attrType="ID…
Comment: LogFC values in edgeR - w/wo intercept
by
Gordon Smyth
45k
The link you've entered for "A guide to creating design matrices for gene expression experiments" doesn't work. Could you please correct th…
Votes
Comment: LogFC values in edgeR - w/wo intercept
Answer: LogFC values in edgeR - w/wo intercept
Answer: LogFC values in edgeR - w/wo intercept
Answer: broken chain import in liftOver
Answer: toGRanges help!
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