Biostar Gmapgenome

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gmapgenome gmapr fastafile

updated 4.5 years ago by Michael Lawrence 11k • written 4.5 years ago by Kyle Johnsen ▴ 20

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gmapr gmapgenome

updated 5.9 years ago by Michael Lawrence 11k • written 5.9 years ago by sean.taylor • 0

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gmapr gmapgenome annotationhub fafile

updated 6.0 years ago by Michael Lawrence 11k • written 6.0 years ago by Johannes Rainer ★ 1.9k

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gmapR GmapGenome error create

6.5 years ago lelemraposo • 0

4 results • Page 1 of 1

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Comment: tximport question on what counts to use for LogFC calculations by mailmpunta • 0

Apologies, I should have been more expansive in my first post. I understand that 1 vs 1 cannot give you e.g. reliable p-values for differe…

Answer: tximport question on what counts to use for LogFC calculations by swbarnes2 ▴ 920

CPMs can't be used for proper DE assessments. But you can't do proper DE assessments with 1 vs 1 sample either, even if you had counts pro…

Comment: getBM error in the biomaRt R package by arungowda9738 • 0

Hello Mike, It's working! Thank you so much. Cheers, Arun

Comment: DESeq2 degrees of freedom by Michael Love 35k

We don’t use expanded model matrices in DESeq2 anymore. The vignette and workflow never use them and they are essentially deprecated.

Comment: Problem getting soft threshold power using WGCNA for RNA-seq data by jms2520 • 0

I am not sure if it is due to the fact that I am using pre-normalized data from my RNA-seq and not using fpkm but rather log counts per mil…

Votes

Answer: betaPrior and lfcShrink

using duplicateCorrelation with limma+voom for RNA-seq data

A: Random Effect in DESeq2

C: dream vignette says limma-voom repeated measures two-group comparison needs two

Answer: edgeR shows different results for same dataset

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