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gmapR
•
reset
0
votes
0
replies
152
views
gmapR source package contains x86_64 binaries
gmapR
8 weeks ago
Tom Lin
• 0
0
votes
1
reply
621
views
gmapR install failed
gmapR
updated 3.7 years ago by
Martin Morgan
25k • written 3.7 years ago by
conbward
• 0
1
vote
4
replies
1.1k
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
5.5 years ago • updated 5.4 years ago
Kyle Johnsen
▴ 30
0
votes
5
replies
1.3k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 5.7 years ago by
Michael Lawrence
★ 11k • written 5.7 years ago by
Amer Ghalawinji
• 0
0
votes
3
replies
1.0k
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 6.7 years ago by
Michael Lawrence
★ 11k • written 6.7 years ago by
karl.nordstroem
• 0
0
votes
4
replies
1.5k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
Kyle Johnsen
▴ 30
1
vote
4
replies
1.3k
views
gmapR failure to build TP53Genome in osx
gmapR
7.6 years ago
jls2282
• 0
3
votes
6
replies
1.5k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
sean.taylor
• 0
0
votes
10
replies
2.0k
views
Running gmap tool via gmapR package?
gmapR
updated 8.6 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
Thomas Sandmann
▴ 90
1
vote
17
replies
2.0k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
Johannes Rainer
★ 2.1k
1
vote
4
replies
1.2k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
Johannes Rainer
★ 2.1k
0
votes
3
replies
2.6k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
9.2 years ago
lelemraposo
▴ 10
0
votes
0
replies
955
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
9.5 years ago
Chao-Jen Wong
▴ 580
0
votes
5
replies
2.0k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
10.6 years ago
Thomas Girke
★ 1.7k
0
votes
1
reply
1.3k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 11.2 years ago by
Michael Lawrence
★ 11k • written 11.2 years ago by
Robert Castelo
★ 3.3k
0
votes
0
replies
1.5k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
11.3 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.2k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 11.4 years ago by
Martin Morgan
25k • written 11.4 years ago by
Guest User
★ 13k
0
votes
2
replies
2.3k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 11.5 years ago by
Michael Lawrence
★ 11k • written 11.5 years ago by
Tim Triche
★ 4.2k
0
votes
0
replies
1.2k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
11.9 years ago
Martin Morgan
25k
19 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
▴ 730
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to
maltethodberg
▴ 180
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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Gordon Smyth
51k
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